PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15530.3
Common NameLR48_Vigan09g203300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 117aa    MW: 13568.4 Da    PI: 9.5547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15530.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.6e-141049249
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                    +y+GVr+++ +g+++A Irdp+    r  r++lg+f+t    aka+++a
  Vang03g15530.3 10 HYRGVRQRP-WGKFAAKIRDPK----RgSRVWLGTFDT----AKAYDRA 49
                    8********.**********83....46**********....5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.7E-232117IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.102.1E-26964IPR001471AP2/ERF domain
CDDcd000181.58E-25963No hitNo description
PROSITE profilePS5103217.8331063IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-171065IPR016177DNA-binding domain
PfamPF008471.6E-81049IPR001471AP2/ERF domain
SMARTSM003801.5E-291069IPR001471AP2/ERF domain
PRINTSPR003677.2E-121122IPR001471AP2/ERF domain
PRINTSPR003677.2E-124565IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
LSENQPEKKH YRGVRQRPWG KFAAKIRDPK RGSRVWLGTF DTAKAYDRAT FRLCGSKAIL  60
NFPLEASAVE EVADAEGEKK QRREEEEVEE VKPVVKKEKT TEQEVKCFRE FSEVPKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27970470ATERF1
3gcc_A5e-27970470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507066.17e-44PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803414e-35EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9VFB38e-80A0A0L9VFB3_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.11e-37(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-29ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]